Computational Biology & Biotechnology Services

Comprehensive contract research services combining high-throughput computational modeling, dynamic simulations, quantum calculations, and experimental biophysical assays.

Protein-Small Molecule Docking

In-silico molecular docking analysis to evaluate binding affinities, active site interactions, hydrogen bonding, and structural dynamics for hit identification and lead optimization.

  • Protein-Ligand Complex Docking
  • Protein-Protein & Protein-Peptide Complex
  • Protein-DNA / Protein-RNA Interactions
  • Protein-Lipid & Small Molecule Libraries

Molecular Dynamics (MD) Simulation

State-of-the-art nanosecond and microsecond dynamic simulations for biomolecules and membrane complexes to evaluate stability, RMSD, RMSF, and binding free energy (MM-PBSA/GBSA).

  • All Atom MD Simulation (100 ns - 900+ residues)
  • Coarse-Grain Simulation (0 - 700+ residues)
  • Membrane & Transmembrane Simulation
  • Umbrella Sampling & Free Energy Profiles

Quantum Chemistry Services

First-principles electronic structure calculations, geometry optimization, and pharmacophore modeling for electronic chemical accuracy.

  • Geometry Optimization & Energy Minimization
  • TD-DFT & CD-DFT Calculations
  • QSAR Modeling & Pharmacophore Modeling
  • HOMO-LUMO Gap & Orbital Analysis

Sequencing & Transcriptomics Data

Comprehensive genomic analysis pipelines for next-generation sequencing data, differential gene expression, and metagenomic functional annotation.

  • NGS Data Processing & Quality Control
  • Metagenomics & Microbiome Profiling
  • Whole Genome Sequencing (WGS) Analysis
  • Differential Expression & Transcriptomics

Instrumentation & Analytical Studies

Biochemical and biophysical data interpretation from analytical instruments including UV-Vis, FTIR, HPLC, and microscopy imaging.

  • Spectroscopy & UV-Vis/FTIR Data Analysis
  • Chromatography & HPLC Peak Deconvolution
  • Microscopy & Biological Image Processing
  • Biochemical Instrument Quantification

LC-MS/MS Proteomics & Metabolomics

High-resolution liquid chromatography-mass spectrometry data analytics for protein identification, small molecule profiling, and metabolomics pathway mapping.

  • Proteomics Mass Spec & Protein Identification
  • Small Molecule Quantification & Metabolomics
  • Metabolite Profiling & Pathway Enrichment
  • Post-Translational Modification (PTM) Analysis

Cell Line & In-Vitro Assays

Experimental cell biology studies and functional cell-based assays for cytotoxicity evaluation, ROS measurement, apoptosis, and gene expression.

  • MTT Cytotoxicity Assay (6 concentrations)
  • ROS Assay & Apoptosis Flow Cytometry
  • Wound Healing Scratch & Colony Formation Assay
  • qRT-PCR Gene Expression & Antibacterial MIC
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Our Scientific Execution Process

Rigorous 5-step methodology ensuring accuracy, reproducibility, and publication-ready deliverables.

1

Target & Ligand Prep

PDB crystal cleanup, protonation states, energy minimization, and 3D ligand conformer generation.

2

Binding Pocket Mapping

Grid box optimization, active site residue identification, and cavity sphere generation.

3

Docking & Simulation

Rigid, semi-flexible, or flexible docking combined with 100ns nanosecond MD trajectory simulation.

4

Scoring & Pose Analysis

Consensus scoring, H-bond profiling, hydrophobic contact mapping, and MM-PBSA free energy calculations.

5

Scientific Deliverables

High-resolution 3D docking figures, rank-ordered compound tables, PDB complex files, and detailed final report.